So according to Microsoft in Windows Server 2012 R2: The Internet Explorer 11 Administrative Template files (interes.admx and inetres.adml) are already installed.
That being said in order to deploy trusted sites the method is to use the "Site to Zone Assignment list" and all articles I have read point to the following location in group policy.
User Settings -> Administrative Templates -> Windows Components -> Internet Explorer -> Internet Control Panel -> Security Page
The problem is that this looks like what you would use in windows 2012 and down. I do not see this in group policy in 2012 R2.
I would be grateful if somebody could shed some light on this I did not want to have to deploy the trusted sites using registry entries.